PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 414aa    MW: 45893.4 Da    PI: 10.1063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00260genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  AA19G00260  6 FVCEICNKGFQRDQNLQLHRRGH 28
                89*******************88 PP

2zf-C2H214.20.0001283105123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  AA19G00260  83 WKCEKCSKKYAVQSDWKAHTKTC 105
                 58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.3E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355784878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.25E-778103No hitNo description
SMARTSM0035513083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVVKKKVYIC PIKTCVHHDA  60
SRALGDLTGI KKHYSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR  120
KDSFITHRAF CDALTEDGAR MCSLGQTNLS NLSFANETNN VMNNQNGFVH RGVHHNDINA  180
AISQFGLGFG HDLSSIHTQG LSEMVQMASN HHLFPSSSTS LPEFSNHHQQ FQIPSNSTNP  240
NLSLSSSSTS QTSTSIQQQQ QTLKETSFSP LFSSTNKQET NKTLSPMSAT ALLQKAAQMG  300
STRSNNTSTP SFFAGSTMAR SATSAASPTQ SSSPLMIHQQ INNNFNANLS RESQNLAVSG  360
VGTSSVDVNS FQLNRSGLNP VQQMGLTRDF LGVSNEHQMS RPFLPQELAR FAPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452174.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D20.0IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLV4KQL30.0V4KQL3_EUTSA; Uncharacterized protein
STRINGBra009549.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-178C2H2-like zinc finger protein